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1

Occupancy maps of 208 chromatin-associated proteins in one human cell type

Partridge, E. Christopher, Chhetri, Surya B., Prokop, Jeremy W., Ramaker, Ryne C., Jansen, Camden S., Goh, Say-Tar, Mackiewicz, Mark, Newberry, Kimberly M., Brandsmeier, Laurel A., Meadows, Sarah K.,

Journal:

Year:

2020

File:

PDF, 12.24 MB

2020

2

Differential stress induced c-Fos expression and identification of region-specific miRNA-mRNA networks in the dorsal raphe and amygdala of high-responder/low-responder rats

Cohen, Joshua L., Ata, Anooshah E., Jackson, Nateka L., Rahn, Elizabeth J., Ramaker, Ryne C., Cooper, Sara, Kerman, Ilan A., Clinton, Sarah M.

Journal:

Behavioural Brain Research

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

3

aRNApipe: A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments

Alonso, Arnald, Lasseigne, Brittany N., Williams, Kelly, Nielsen, Josh, Ramaker, Ryne C., Hardigan, Andrew A., Johnston, Bobbi, Roberts, Brian S., Cooper, Sara J., Marsal, Sara, Myers, Richard M.

Journal:

Year:

2017

Language:

english

File:

PDF, 168 KB

english, 2017

4

Identification and Function of Enhancers in the Human Genome

Coppola, Candice J., Ramaker, Ryne, Mendenhall, Eric M.

Journal:

Human Molecular Genetics

Year:

2016

Language:

english

File:

PDF, 325 KB

english, 2016

5

RNA sequencing of pancreatic adenocarcinoma tumors yields novel expression patterns associated with long-term survival and reveals a role for ANGPTL4

Kirby, Marie K., Ramaker, Ryne C., Gertz, Jason, Davis, Nicholas S., Johnston, Bobbi E., Oliver, Patsy G., Sexton, Katherine C., Greeno, Edward W., Christein, John D., Heslin, Martin J., Posey, James

Journal:

Molecular Oncology

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

6

Epigenetic Defects in the B cell lineage of Systemic Lupus Erythematosus Patients Display Population‐Specific Patterns

Breitbach, Megan, Ramaker, Ryne C., Roberts, Kevin, Kimberly, Robert P., Absher, Devin

Journal:

Arthritis & Rheumatology

Year:

2019

Language:

english

File:

PDF, 759 KB

english, 2019

7

Post-mortem molecular profiling of three psychiatric disorders

Ramaker, Ryne C., Bowling, Kevin M., Lasseigne, Brittany N., Hagenauer, Megan H., Hardigan, Andrew A., Davis, Nicholas S., Gertz, Jason, Cartagena, Preston M., Walsh, David M., Vawter, Marquis P., Jon

Journal:

Genome Medicine

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

8

R2DGC: Threshold-free peak alignment and identification for 2D gas chromatography mass spectrometry in R

Ramaker, Ryne C, Gordon, Emily, Cooper, Sara J

Journal:

Year:

2017

Language:

english

File:

PDF, 225 KB

english, 2017

9

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations

Ramaker, Ryne C, Hardigan, Andrew A, Goh, Say-Tar, Partridge, E. Christopher, Wold, Barbara, Cooper, Sara J, Myers, Richard M.

Journal:

Genome Research

Year:

2020

File:

PDF, 1.86 MB

2020

10

A genome-wide interactome of DNA-associated proteins in the human liver

Ramaker, Ryne C., Savic, Daniel, Hardigan, Andrew A., Newberry, Kimberly, Cooper, Gregory M., Myers, Richard M., Cooper, Sara J.

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 1.79 MB

english, 2017

11

Distinct gene regulatory programs define the inhibitory effects of liver X receptors and PPARG on cancer cell proliferation

Savic, Daniel, Ramaker, Ryne C., Roberts, Brian S., Dean, Emma C., Burwell, Todd C., Meadows, Sarah K., Cooper, Sara J., Garabedian, Michael J., Gertz, Jason, Myers, Richard M.

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 3.52 MB

english, 2016

12

Discovery and validation of circulating biomarkers of colorectal adenoma by high-depth small RNA sequencing

Roberts, Brian S., Hardigan, Andrew A, Moore, Dianna E, Ramaker, Ryne C, Jones, Angela L, Fitz-Gerald, Meredith B, Cooper, Gregory M, Wilcox, C Mel, Kimberly, Robert P, Myers, Richard M

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

13

De novo mutations in the GTP/GDP-binding region of RALA, a RAS-like small GTPase, cause intellectual disability and developmental delay

Hiatt, Susan M., Neu, Matthew B., Ramaker, Ryne C., Hardigan, Andrew A., Prokop, Jeremy W., Hancarova, Miroslava, Prchalova, Darina, Havlovicova, Marketa, Prchal, Jan, Stranecky, Viktor, Yim, Dwight K

Journal:

Year:

2018

Language:

english

File:

PDF, 7.21 MB

english, 2018

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